Datasets with embeddings and other representations for all proteins in Uniprot/Swiss-Prot

Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders

MSA Transformer reproduction code

DropleX - Tracking and Analysis from video recordings

adabmDCA 2.0 – a flexible but easy-to-use package for Direct Coupling Analysis

Pytorch implementation of adabmDCA

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

Code for running RFdiffusion

Hackathon on network generation

A reimplementation of 2D Convolutional and Transposed Convolutional Layers in PyTorch, designed for easy modifications and analysis. Includes comprehensive explanations and testing.

Course materials for: Introduction to Data Science and Programming

Advanced Topics in Artificial Intelligence, NUS CS6208, 2023

A platform for compiling, analyzing, and exploring tracking data

the very good free whiteboard tldraw in the jupyter output

Class materials for computational physics course

Code from paper 'Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation'.

An easy and fast way to create a Python GUI 🐍

A transactional, relational-graph-vector database that uses Datalog for query. The hippocampus for AI!

Docker implemented in around 100 lines of bash

DALL-E storyboard creation from text file

Material for Talk at PyData Seattle 2017

A workshop on data visualization in Python with notebooks and exercises for following along. Slides contain all solutions.

Main repository for Csound

An interactive visualization tool for graph theory

Network Analysis of Generalized Musical Spaces